I am trying to download a genome in the fastq format, but can only access the fasta format to this point. I know that I can use the SRAtoolkit to convert SRA format to fastq, but I'm not sure which genome to choose, or even if these are entire genomes.
For example, when I search "Calypte anna", for SRA-->DNA-->genomes, I get the options below...are these all good options? My end-goal is to incorporate this Calypte anna genome into my dataset (genomes of other species) in a single VCF file.
Search results Items: 14 Filters activated: DNA, genome. Clear all to show 16 items. Select item 1649833 1. Anna's Hummingbird 17kb cut on Blue Pippin and 110 pM loading concentration
10 PACBIO_SMRT (PacBio RS II) runs: 1.6M spots, 26.3G bases, 87.5Gb downloads
Accession: SRX1131887 Select item 1648286
- Anna's Hummingbird 17kb cut on Blue Pippin and 125 pM loading concentration
52 PACBIO_SMRT (PacBio RS II) runs: 8.5M spots, 122.6G bases, 412.3Gb downloads
Accession: SRX1130526 Select item 1648285
- Anna's Hummingbird 17kb cut on Blue Pippin and 100 pM loading concentration
1 PACBIO_SMRT (PacBio RS II) run: 163,482 spots, 1.4G bases, 4.8Gb downloads
Accession: SRX1130525 Select item 456853
1 ILLUMINA (Illumina HiSeq 2000) run: 103.9M spots, 10.2G bases, 5.7Gb downloads
Accession: SRX327908 Select item 456852 5. BGI-FCB066MABXX-110618-L2-N300
1 ILLUMINA (Illumina HiSeq 2000) run: 102.8M spots, 10.1G bases, 5.2Gb downloads
Accession: SRX327907 Select item 456851 6. BGI-FCB05B5ABXX-110525-L6-N300
1 ILLUMINA (Illumina HiSeq 2000) run: 101.6M spots, 10G bases, 5.2Gb downloads