understanding the data from the ucsc table browser
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4.7 years ago
a4appy23 ▴ 50

im trying to find the intron length distribution of the hg18 assembly downloaded from the table browser.the refseq file has the following columns in iti calculated gene length by txstart-txend and made a plot of the distribution..however i need to find the intron length .

"bin" "name" "chrom" "strand" "txStart" "txEnd" "cdsStart" "cdsEnd" "exonCount" "exonStarts" "exonEnds" "score" "name2" "cdsStartStat" "cdsEndStat" "exonFrames"

gene genome genome browser introns R • 674 views
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Entering edit mode
4.7 years ago

I need to find the intron length from this data.

length of ith intron:

intronLength +=  $exonStarts[ith+1] -  $exonEnds[ith]  )
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