Question: SNP input data for Arlequin
0
gravatar for mahnazkiani
15 months ago by
mahnazkiani50
United States
mahnazkiani50 wrote:

I got the population.haps.vcf file from Stacks and converted to .arp file using PGDSpider, but still is not working in Arlequin. I appreciate your help for preparing Arlequin input file. I have 48 samples from 8 populations. Do I need to edit the file?

Thanks!``

ddrad • 904 views
ADD COMMENTlink written 15 months ago by mahnazkiani50

What is your issue? I have ran across the issue of Arlequin not showing any progress during an analysis, and just had the analysis done in DnaSP instead.

ADD REPLYlink written 15 months ago by Giovanni.madrigal12180

I tried to use DnaSP as well but when I convert my data to .NEXUS by PGDSpider it is not readable in DnaSp

ADD REPLYlink modified 15 months ago • written 15 months ago by mahnazkiani50
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