Question: 1000 Human Genomes Project Population Alignment Data
0
gravatar for GTR
10 days ago by
GTR0
GTR0 wrote:

I found raw variant calls for individuals in high coverage data (30X) which I found right here:

ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/1000G_2504_high_coverage/working/20190425_NYGC_GATK/raw_calls/

Where could I find either the BAM/CRAM files used or population VCFs?

Thank you.

snp next-gen alignment genome • 115 views
ADD COMMENTlink modified 10 days ago by finswimmer12k • written 10 days ago by GTR0
2
gravatar for finswimmer
10 days ago by
finswimmer12k
Germany
finswimmer12k wrote:

Hello,

the corresponding alignment files are here:

fin swimmer

ADD COMMENTlink written 10 days ago by finswimmer12k
1
gravatar for juanjo75es
10 days ago by
juanjo75es50
juanjo75es50 wrote:

Here it is all the data (also including low coverage): http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/1000_genomes_project/

You can make a script to download only high coverage ones.

ADD COMMENTlink written 10 days ago by juanjo75es50
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