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• Where can I download genomes of Retroviruses?
  Hi, for my comparison of viral genomes, I would like to download genomes of retroviruses, which ...
• Is there a model for detection of few reads for low abundance targets?
  Hello, Is there a model (or a reason) why genome with low abundance only show a few portions of ...
• Custom BLAST database with mask
  Hi, I am new to bioinformatics. But I have a dataset that I want to analyze. I want to build a c...
• Visualisation of a masked genomic sequence
  What program can be used for the visualisation of the masked genomic seq? Thank you!
• assembler for viral genome sequencing data
  I have raw reads of virus data. and I want to assemble the viral genome. any tool / pipeline sugg...
• Should Masked Or Unmasked Chromosome Sequence Be Given To Cnvnator
  In the step 2 of CNVnator, should masked or unmasked chromosome sequence be given to CNVnator?
• removing/ masking satellite sequences in data
  What is easiest way to exclude/ mask satellite sequences in bam file of ChIP-seq data? Thanks K...
• Whole Genome Vs Targeted Gene Sets For Phylogenetics In A Virus-Host Response Analysis
  I am interested in mapping host responses to viral infection against a phylogenetic tree. In theo...
• Making collinerity or synteny map for genomic element that is not part of genes?
  How I can make colinearity maps or syntenic maps for genomic elements (i.e Endogenous viruses) wh...
• Endogenous retrotransposons quantifaction from RNAseq
  Has anyone had any experience quantifying retrotransposons in human RNAseq data, eg., LTRs, ERVs,...
• Masking repetitive sequences ...can I then map using BWA?
  Hi there In need of help please! I'm masking the repetitive regions in my wheat sequencing data...
• Common Viral Dna In Human Sequencing Samples?
  What are the most common viral DNA sequences found in human or other mammalian resequencing sampl...
• how to run repeatmasker
  Hi, I installed repearmasker. How can run it with my genomic sequence to mask. thanks
• how to detect mutation from viral RNA-seq data
  Hi All, I have developed a persistent infection (PI) on cancer cells using NDV and then we seque...