Graphic outputs using GAPIT

Question

[baaliou52]

Hi ! I have this error message whenever I try to perform a complete GWAS analysis using GAPIT.

Who can help me about the possible reasons of this?

Thanks!

Error in GAPIT.QC(Y = Y, KI = KI, GT = GT, CV = CV, Z = Z, GK = GK) : 
  GAPIT says: there is no place to match IDs!
In addition: There were 16 warnings (use warnings() to see them)
Called from: GAPIT.QC(Y = Y, KI = KI, GT = GT, CV = CV, Z = Z, GK = GK)

[zx8754]

Related post at GAPIT Google Group.

Answer 1

[nkimanicyrus]

Hi baaliou52 I had the same issue and resolved it by ensuring the labels (IDs) on the phenotype and genotype files match