News:UniProt: Change of FT and CC section in UniProtKB text format
1
2
Entering edit mode
2.1 years ago

On December 18, 2019

We are going to change the format of the FT (feature table) and CC (comments) sections of the UniProtKB text files. The changes of the FT section will likely affect all parsers and software will have to be adapted accordingly. The changes of the CC section are smaller, but may also require code adaptations depending on the CC annotation types that you parse.

The motivation for this change is described in the announcement for the functional annotation of different gene products in UniProtKB/Swiss-Prot, where you can also find the technical details and examples under the heading Text format.

To help you test your software, we have generated files with example entries in the current and new format: ftp://ftp.expasy.org/databases/swiss-prot/test/

Other planned changes for UniProt can be found at https://www.uniprot.org/changes. Please don't hesitate to contact the UniProt helpdesk in case of questions.

uniprot parsing format protein News • 668 views
ADD COMMENT
1
Entering edit mode
23 months ago

Just a brief reminder about this upcoming format change - if you are parsing UniProtKB text format, your code is likely to stumble over this. Please have a look at the announcements!

ADD COMMENT

Login before adding your answer.

Traffic: 2580 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6