Question: Merge overlapping intervals in a bed file containing different chromosomes
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dzisis1986 • 20 wrote:
Hello I have a file test.bed like this :
chr2 3300000 3499999 0 0.013255902570394
chr3 300000 499999 0 0.015744466292456
chr4 9400000 9599999 0 0.045555030342908
chr5 1700000 1899999 0 0.013255902570394
chr5 23900000 24099999 0 0.037583056937021
chr5 3000000 3199999 0 2.62328977303342E-06
chr5 3100000 3299999 0 1.61951552785474E-08
chr5 3200000 3399999 0 0.001461420574531
chr5 3700000 3899999 0 0.013255902570394
chr5 3800000 3999999 0 0.013255902570394
I would like to merge intervals that are overlapping and create a new merged.bed file like this :
chr2 3300000 3499999
chr3 300000 499999
chr4 9400000 9599999
chr5 1700000 1899999
chr5 3000000 3399999
chr5 3700000 3999999
chr5 23900000 24099999
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modified 15 months ago
by
Pierre Lindenbaum ♦ 133k
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written
15 months ago by
dzisis1986 • 20