Question: Get original format information from SRA metadata
0
gravatar for mariafirulevabio
5 months ago by
mariafirulevabio40 wrote:

Dear all,

Consider I want to get the original format for certain SRR (e.g., this one).

I have SRAmetadb.sqlite. What exactly should I do in this case?

Best wishes,

Maria

metadata pysradb sradb sqlite3 sra • 198 views
ADD COMMENTlink written 5 months ago by mariafirulevabio40

What do you mean by "original format"?

ADD REPLYlink written 5 months ago by ATpoint31k

I mean Data access -> Original format -> TenX in "Type" column, using my link.

ADD REPLYlink written 5 months ago by mariafirulevabio40

If you mean fastq, then try to use SRA Toolkit.

ADD REPLYlink written 5 months ago by shoujun.gu290
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