I have a
vcf merge file with multiple samples including chromosome and position of
SNPs. I want to plot the
SNP density over separate chromosomes for all samples.
chromosome 1 with SNP density for all samples. . . chromosome n
I found a few posts for plotting with single samples and different file formats. But I want to plot for all samples. A few lines of my file are:
#CHROM POS REF ALT Sample1 Sample2 Sample3 1 635 A T T T T 1 800 T A A NA A 1 1234 G C C C C
Thank you for any suggestions/help!