Question: Extracting assembly accession number and protein ID using e-utilities
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gravatar for geizetomazetto
9 months ago by
geizetomazetto0 wrote:

Hi Folks,

I am trying to use my list of protein IDs (e.,g VUX63899.1,QDO61010.1, QDO50771.1) to retrieve the assembly accession number.

Using the follow commands ..

epost -input teste.txt -db protein | elink -target nuccore -db protein | elink -target assembly |esummary | xtract -pattern AssemblyAccession -element AssemblyAccession > assemblyAccession.txt

However, I need two columns with assembly accession with its corresponding protein IF. I could not figure out yet what the command I need to add.

Any tips?

Thanks in advance.

ADD COMMENTlink modified 9 months ago • written 9 months ago by geizetomazetto0
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