Question: Tool to calculate insertion, deletion, mismatch rate in alignments?
0
gravatar for BioinformaticsLad
8 weeks ago by
BioinformaticsLad140 wrote:

I know samtools stats can quantify the mismatch rate in SAM files. But are there any tools that can also calculate insertions and deletions?

alignment • 128 views
ADD COMMENTlink modified 8 weeks ago by h.mon28k • written 8 weeks ago by BioinformaticsLad140

Alfred turned out to be exactly what I was looking for.

ADD REPLYlink written 29 days ago by BioinformaticsLad140
2
gravatar for h.mon
8 weeks ago by
h.mon28k
Brazil
h.mon28k wrote:

Mismatch and Indel statistics from BAM/SAM file

ADD COMMENTlink written 8 weeks ago by h.mon28k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1730 users visited in the last hour