Question: Tool to calculate insertion, deletion, mismatch rate in alignments?
0
gravatar for BioinformaticsLad
16 months ago by
BioinformaticsLad160 wrote:

I know samtools stats can quantify the mismatch rate in SAM files. But are there any tools that can also calculate insertions and deletions?

alignment • 591 views
ADD COMMENTlink modified 16 months ago by h.mon32k • written 16 months ago by BioinformaticsLad160

Alfred turned out to be exactly what I was looking for.

ADD REPLYlink written 15 months ago by BioinformaticsLad160
2
gravatar for h.mon
16 months ago by
h.mon32k
Brazil
h.mon32k wrote:

Mismatch and Indel statistics from BAM/SAM file

ADD COMMENTlink written 16 months ago by h.mon32k
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