I have used snippy package for SNP calling and later on used those for pyseer-GWAS analyses. But it seems that this command of bedtools cannot read the vcf files.
bcftools merge -m none -0 -O z *.vcf.gz > merged.vcf.gz I am getting this error: bcftools: Relink /root/miniconda3/bin/../lib/./libgfortran.so.4' with /lib/x86_64-linux-gnu/librt.so.1' for IFUNC symbol `clock_gettime' Failed to open 100010367.vcf.gz: could not load index
Is there anyone having this kind of experience with pyseer before? Is there any problem with bedtools or vcf files?