Question: calculate the minimum free energy of RNA structures
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gravatar for gaikwad.87
8 months ago by
gaikwad.870
gaikwad.870 wrote:

I need some help to calculate the minimum free energy of RNA structures from RNA sequences. I have a list of 5000 or so RNA for which I need to calculate the minimum free energy. I have the FASTA file for the same. I was trying to use web-based interface ViennaRNA Web Services, but it calculates only one sequence at a time. Are you guys aware of any package in R to calculate the same? I will appreciate the help.

next-gen R • 286 views
ADD COMMENTlink written 8 months ago by gaikwad.870
1

Can't you install and run ViennaRNA locally?

ADD REPLYlink modified 8 months ago • written 8 months ago by h.mon30k

As easy as: conda install -c bioconda viennarna

ADD REPLYlink written 8 months ago by Asaf8.2k
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