Question: Genome assembly of pacbio reads with SMRT Link
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gravatar for star715
10 months ago by
star71520
star71520 wrote:

I have been trying to do a genome assembly of a microbial genome around 9Mbp. I am using SMRT Link for the purpose. Can anyone suggest me the best selection of parameters (seed length cutoff, FALCON cfg overrides, seed coverage, minimum concordance) for a good assembly of the genome of that size?

ADD COMMENTlink modified 9 months ago by Biostar ♦♦ 20 • written 10 months ago by star71520
1

I will just suggest flye. Did you run it with the default parameters? What was the quality?

ADD REPLYlink written 10 months ago by Asaf8.4k
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