Question: Genome assembly of pacbio reads with SMRT Link
gravatar for star715
4 weeks ago by
star7150 wrote:

I have been trying to do a genome assembly of a microbial genome around 9Mbp. I am using SMRT Link for the purpose. Can anyone suggest me the best selection of parameters (seed length cutoff, FALCON cfg overrides, seed coverage, minimum concordance) for a good assembly of the genome of that size?

ADD COMMENTlink modified 4 weeks ago by Asaf6.5k • written 4 weeks ago by star7150

I will just suggest flye. Did you run it with the default parameters? What was the quality?

ADD REPLYlink written 4 weeks ago by Asaf6.5k
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