Question: Genome assembly of pacbio reads with SMRT Link
0
gravatar for star715
4 weeks ago by
star7150
star7150 wrote:

I have been trying to do a genome assembly of a microbial genome around 9Mbp. I am using SMRT Link for the purpose. Can anyone suggest me the best selection of parameters (seed length cutoff, FALCON cfg overrides, seed coverage, minimum concordance) for a good assembly of the genome of that size?

ADD COMMENTlink modified 4 weeks ago by Asaf6.5k • written 4 weeks ago by star7150

I will just suggest flye. Did you run it with the default parameters? What was the quality?

ADD REPLYlink written 4 weeks ago by Asaf6.5k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 757 users visited in the last hour