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4.5 years ago
sana777munquad
▴
10
Currently I am working on WGCNA, using gene expression data. In WGCNA correlation and p-value is default or we can reset it. I am confused. if i want to reset the correlation & p-value then how to reset it? Plz help me out.
Hi, What do you mean correlation? Do you mean correlation gene expression profiles with clinical traits?
I have a matrix of RNA-seq data of genes vs samples. I want to find out co-related genes from WGCNA. I am not using any clinical trait.
ok. you mean that you would like to change correlation method. in adjacency() function you can change the type of correlation method. default is the Pearson correlation coefficient.
No I dont want to change the method of correlation.I want to change the correlation value for gene expression prediction like if I will get 0.7 then we can say that it is good result. one more thing how can I edit the p-value in code.like someone taken 0.05 and others are taking 0.01.
If you want help, please show all of your analysis steps and also paste a sample of your data here. Unfortunately, textual descriptions are often unhelpful.