Question

Tool to calculate insertion, deletion, mismatch rate in alignments?

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4.5 years ago

BioinformaticsLad ▴ 200

I know samtools stats can quantify the mismatch rate in SAM files. But are there any tools that can also calculate insertions and deletions?

alignment • 1.9k views

ADD COMMENT • link updated 4.5 years ago by h.mon 35k • written 4.5 years ago by BioinformaticsLad ▴ 200

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Alfred turned out to be exactly what I was looking for.

ADD REPLY • link 4.5 years ago by BioinformaticsLad ▴ 200

score 2 · Accepted Answer · 2019-10-14

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4.5 years ago

h.mon 35k

ADD COMMENT • link 4.5 years ago by h.mon 35k