Question: comparing multiple gene sets with expression values
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gravatar for mirshahvaladi
10 months ago by
mirshahvaladi0 wrote:

Hi

who knows how we can compare multiple samples with different genes and different fold change values and create a heatmap like this ; enter image description here

rna-seq • 173 views
ADD COMMENTlink modified 10 months ago • written 10 months ago by mirshahvaladi0
1

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ADD REPLYlink written 10 months ago by WouterDeCoster44k

If you already have the fold-changes, a heatmap like this can be made in MicroSoft Excel or LibreOffice Calc, among others.

But you would get more helpful answers if you explained what kind of data you have, possibly providing small examples.

ADD REPLYlink written 10 months ago by h.mon31k

Thanks for the answer, I have 16 different expression sets like this:

Mocs2 40.6 64.4

H4c1 64.1 80.1

Smndc1 70.5 95.8

Hsp90a 107.8 63.3

and they have different genes (around 40 genes in common between each data set). I need to calculate the fold change between them and compare the common genes between all conditions in terms of foldchange and possibly the function of those genes in different GOs.

ADD REPLYlink modified 10 months ago • written 10 months ago by mirshahvaladi0
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