Question: KEGG pathway enrichment analysis for wheat and barley
1
gravatar for harrypotterandsbt
12 months ago by
harrypotterandsbt70 wrote:

Hi guys! I met a problem about how to do KEGG pathway enrichemnt analysis for wheat and barley. The KEGG website doesn't have two plant species annotation file. I don't know where to find simliar resource. or should I run electrionic annotion using blastx or some tools to do these.Any ideals? Thank you !

barley kegg wheat • 428 views
ADD COMMENTlink written 12 months ago by harrypotterandsbt70

I know kegg has the japanese rice genome: https://www.genome.jp/dbget-bin/www_bget?gn:T01015 and also a wheat relative: https://www.genome.jp/dbget-bin/www_bget?gn:T04345

That should give you a starting point

ADD REPLYlink written 12 months ago by Mark800

Yeah I know. But still not exactly for wheat and barley

ADD REPLYlink written 12 months ago by harrypotterandsbt70

I don't know how to do a KEGG pathway enrichment. But I know you could do GO enrichment analysis on with agrigo (http://systemsbiology.cau.edu.cn/agriGOv2/index.php)

ADD REPLYlink written 12 months ago by guillaume.rbt830

Yeah! Thank you! I know the webserver.

ADD REPLYlink written 12 months ago by harrypotterandsbt70
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1683 users visited in the last hour