Question: centrifuge-multi command not found
0
gravatar for angus
6 days ago by
angus0
angus0 wrote:

Hi Community

I have the latest release of centrifuge (1.0.4) despite the changelog stating that it has support for multiple samples centrifuge-multi -h returns "command not found"

I feel like I'm posting a v stupid question here but honestly, have not got a clue why its not working, any help would be much appreciated!

Kind regards

Gus

centrifuge • 59 views
ADD COMMENTlink modified 5 days ago • written 6 days ago by angus0

I'm afraid there is too little info in your post to give you adequate answers.

Do add some detail on eg how you installed this centrifuge, which cmdline you exactly try to execute, ....

ADD REPLYlink written 6 days ago by lieven.sterck6.4k

What OS are you using this on? Did the make process complete successfully? Are you able to get an output doing ./centrifuge-multi -h in directory with the executable assuming one was made?

ADD REPLYlink written 6 days ago by genomax75k

You may also want to try kaiju as an alternative.

ADD REPLYlink written 6 days ago by genomax75k
0
gravatar for angus
5 days ago by
angus0
angus0 wrote:

Hi all Thanks for the suggestions; it looks like the centrifuge wrapper now contains support for the --sample sheet option without needing to call centrifuge-multi so therefore centrifuge-multi only really existed because it was made on github as a seperate executable before being committed directly to the master.

ADD COMMENTlink written 5 days ago by angus0
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