1
0
Entering edit mode
23 months ago
angus • 0

Hi Community

I have the latest release of centrifuge (1.0.4) despite the changelog stating that it has support for multiple samples centrifuge-multi -h returns "command not found"

I feel like I'm posting a v stupid question here but honestly, have not got a clue why its not working, any help would be much appreciated!

Kind regards

Gus

centrifuge • 399 views
0
Entering edit mode

Do add some detail on eg how you installed this centrifuge, which cmdline you exactly try to execute, ....

0
Entering edit mode

What OS are you using this on? Did the make process complete successfully? Are you able to get an output doing ./centrifuge-multi -h in directory with the executable assuming one was made?

0
Entering edit mode

You may also want to try kaiju as an alternative.

0
Entering edit mode
23 months ago
angus • 0

Hi all Thanks for the suggestions; it looks like the centrifuge wrapper now contains support for the --sample sheet option without needing to call centrifuge-multi so therefore centrifuge-multi only really existed because it was made on github as a seperate executable before being committed directly to the master.