Arabidopsis indexed genome

Question

[schlogl]

Hey guys do you know where I can find the indexed genome for Arabidopsis thaliana for using with hitsat2? Thanks for any direction.

I think I found it.

Paulo

[schlogl]

I got it. ftp://ftp.ensemblgenomes.org/pub/plants/release-45/fasta/arabidopsis_halleri/dna_index/ Thanks

[GenoMax]

This index is not something you can use with hisat2. You will need to build your own starting with the fasta genome sequence.

[ATpoint]

This is also the halleri, not thaliana genome, be aware. I will untoggle the accepted status to avoid confusion.

[schlogl]

Thanks I was trying to avoid that but...8(