Entering edit mode
4.7 years ago
mahnazkiani
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60
I have RNA-seq data for Wheat samples, and have a problem to find a way to do functional analysis such as Pathway analysis, any recommendation appreciated.
Thank you for your response, I did use AgriGo, but none of my DEGs mapped. Do you have any recommendations for pathway analysis? I have used KOBAS before for other species, but they don't have a wheat genome.
What do you mean by "none of my DEGs mapped" ? Have you been able to run agriGO and found no enriched GO?
Yes, I did run the agriGO, and didn't find any enriched GO
And, sure not an ID conversion issue? Strange that AgriGO would not map any plant DEGs for GO analysis.