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• genomic location convertion between hg19 and hg38
  Hi, I need to convert hg19 coordinates to hg38 (or opposite, doesn't matter). I tried to use l...
• Why is the hg38 exome so much bigger than hg19?
  Hi, I downloaded the NCBI Refseq curated file of Genes and Gene Predictions from the UCSC Table ...
• Human reference genome - remapping coordinates
  We tried remapping the genomic coordinates of hg19 to hg38 using NCBI Remap. We got some of the l...
• What is the best reference genome for Mir-seq analysis
  Hi I am currently studying on MiRNAs with analyze the Mir-seq,s data. So I am wondering what is ...
• What is the name of this build What is equivalent to build37.fa.bz2
  Hi everyone So sorry if it is a naiive thing, but I am still new: What is name of this build: ...
• Reasons why genome coordinates may not have a relative between reference genome assemblies
  I was wondering why might it be that a given coordinate in say, hg19, may not map to any coordina...
• Does any large resequencing project have a genuinely hg38 VCF?
  In one of our projects we are comparing hg19-related assemblies (such as b37 etc) to hg38, and ba...
• Missing SNP in gnomAD hg38 liftover vcfs
  Hi, On gnomAD website there are both hg19 and hg38 vcf. hg38 vcfs are liftover from hg19. https:...
• Mapping percent difference between hg38 and hg19
  Hey, Is it normal that I have a drop of ~10% mapping using hg38 compared to hg19? I mean I mapp...
• Human genome with masked endogenous viral sequences
  Do you know where is possible to find a version of hg19 or hg38 with masked endogenous viral sequ...
• How to generate start & end coordinates for each chromosome of human ref genome in bed. format (0-based index)
  Dear Biostars, My aim is to generate start and end cordinates for each chromosome in human refe...
• LiftOver CNA data from Hg19 to Hg38
  I have several vcf format type files that contain copy number alteration data from several source...
• Is GRCh37 and hg19 are the same?
  I would like to visualise some of my bam files on IGV, the reference genome used to analyse was G...
• Visualizing hg19 and hg38 FPKMs in a single plot
  Hello everyone, I am trying to plot `NCAM1` gene expression from 5 disparate RNA sequencing data...