Question: Problem in installing methyl kit in R 3.6.1
0
gravatar for sinha.puja
5 months ago by
sinha.puja10
sinha.puja10 wrote:

Hi,

I was trying to install methyl kit package in R 3.6.1 with the following command but it has error showing that

BiocManager::install("methylkit" , dependencies = TRUE)

library(methylkit)

Error in library(methylkit) : there is no package called ‘methylkit’

Please help as I want to use the below function for annotating CpG sites present in exon, intron & intergenic regions from NGS WGBS data.

gene.obj = read.transcript.features("P:/New folder/refGene.bed.txt", package = "methylKit")

R • 296 views
ADD COMMENTlink modified 5 months ago by ATpoint35k • written 5 months ago by sinha.puja10
0
gravatar for ATpoint
5 months ago by
ATpoint35k
Germany
ATpoint35k wrote:

methylKit => with a capital K. In your install command it is lowercase k.

Simply copy the command from here and you'll be fine. https://bioconductor.org/packages/release/bioc/html/methylKit.html

ADD COMMENTlink modified 5 months ago • written 5 months ago by ATpoint35k

Hello sinha.puja

If an answer was helpful, you should upvote it; if the answer resolved your question, you should mark it as accepted. You can accept more than one answer if they all work. Not providing feedback to users that help you is bad etiquette

Upvote|Bookmark|Accept

ADD REPLYlink written 5 months ago by RamRS27k
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