Question: Problem in installing methyl kit in R 3.6.1
0
gravatar for sinha.puja
14 months ago by
sinha.puja10
sinha.puja10 wrote:

Hi,

I was trying to install methyl kit package in R 3.6.1 with the following command but it has error showing that

BiocManager::install("methylkit" , dependencies = TRUE)

library(methylkit)

Error in library(methylkit) : there is no package called ‘methylkit’

Please help as I want to use the below function for annotating CpG sites present in exon, intron & intergenic regions from NGS WGBS data.

gene.obj = read.transcript.features("P:/New folder/refGene.bed.txt", package = "methylKit")

R • 716 views
ADD COMMENTlink modified 14 months ago by ATpoint46k • written 14 months ago by sinha.puja10
1
gravatar for ATpoint
14 months ago by
ATpoint46k
ATpoint46k wrote:

methylKit => with a capital K. In your install command it is lowercase k.

Simply copy the command from here and you'll be fine. https://bioconductor.org/packages/release/bioc/html/methylKit.html

ADD COMMENTlink modified 14 months ago • written 14 months ago by ATpoint46k

Hello sinha.puja

If an answer was helpful, you should upvote it; if the answer resolved your question, you should mark it as accepted. You can accept more than one answer if they all work. Not providing feedback to users that help you is bad etiquette

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ADD REPLYlink written 14 months ago by Ram32k
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