Problem in installing methyl kit in R 3.6.1

Question

[sinha.puja]

Hi,

I was trying to install methyl kit package in R 3.6.1 with the following command but it has error showing that

BiocManager::install("methylkit" , dependencies = TRUE)

library(methylkit)

Error in library(methylkit) : there is no package called ‘methylkit’

Please help as I want to use the below function for annotating CpG sites present in exon, intron & intergenic regions from NGS WGBS data.

gene.obj = read.transcript.features("P:/New folder/refGene.bed.txt", package = "methylKit")

Answer 1

[ATpoint]

methylKit => with a capital K. In your install command it is lowercase k.

Simply copy the command from here and you'll be fine. https://bioconductor.org/packages/release/bioc/html/methylKit.html

[Ram]

Hello sinha.puja

If an answer was helpful, you should upvote it; if the answer resolved your question, you should mark it as accepted. You can accept more than one answer if they all work. Not providing feedback to users that help you is bad etiquette