I was trying to install methyl kit package in R 3.6.1 with the following command but it has error showing that
BiocManager::install("methylkit" , dependencies = TRUE)
Error in library(methylkit) : there is no package called ‘methylkit’
Please help as I want to use the below function for annotating CpG sites present in exon, intron & intergenic regions from NGS WGBS data.
gene.obj = read.transcript.features("P:/New folder/refGene.bed.txt", package = "methylKit")