Pathway analyses with a transcriptome, which tool shall I use?
0
0
Entering edit mode
4.5 years ago
luzglongoria ▴ 50

Hi,

I have a de novo assembly (a transccriptome) from a Plasmodium organism. I need to do a pathway analysis in order to determine (for instance) the enriched metabolic pathway in the transcriptome. I can compare my transcriptome with a previous genome from Plasmodium that has been published (Plasmodium relictum). the problem is that I am not sure how to do these analyses. I have been reading about some packages in R like ReactomePA but it seems that Plasmodium organisms are not included (https://bioconductor.org/packages/release/bioc/vignettes/ReactomePA/inst/doc/ReactomePA.html).

Thank you so much in advance.

All the best,

Luz

ReactomePA pathway Enrichment Analysis RNA-Seq • 886 views
ADD COMMENT

Login before adding your answer.

Traffic: 2619 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6