ViennaRNA-1.8.4 install error CAP-miRSeq
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4.4 years ago
jomagrax ▴ 40

Hi everyone!

Im trying to install CAP-miRSeq but I´m having trouble with ViennaRNA, I find this kind of errors

/home/superuser/CAP-miRSEQ/build/ViennaRNA-1.8.4/lib/subopt.c:1084: undefined reference to `LoopEnergy'
/home/superuser/CAP-miRSEQ/build/ViennaRNA-1.8.4/lib/subopt.c:1177: undefined reference to `HairpinE'

For RandFold 2.0 I had similar error messege but I could fix It with this post Does anyone have the solution for this one?

Also I tried installing via conda with

conda install cap-mirseq

But It doesnt appear when I try to activate it

$ conda info --envs
# conda environments:
#
base                  *  /home/superuser/anaconda2
bioinfo                  /home/superuser/anaconda2/envs/bioinfo
picrust2                 /home/superuser/anaconda2/envs/picrust2
qiime2-2018.8            /home/superuser/anaconda2/envs/qiime2-2018.8
qiime2-2019.1            /home/superuser/anaconda2/envs/qiime2-2019.1
qiime2-2019.7            /home/superuser/anaconda2/envs/qiime2-2019.7

Thank you in advance, Jose

rna-seq software error CAP-miRSeq ViennaRNA • 1.1k views
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conda install doesn't create another environment, it installs on the current environment

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