caluculate q30 from bam file with samtools
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21 months ago
genya35 ▴ 40

Hello,

Is it possible to calculate Q30 from a bam with Samtools? I've looked at Samtools stats and didn't see that option.

Thanks

next-gen • 891 views
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Q30 for entire dataset or average per read?

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One value for the entire bam file please.

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Please use ADD REPLY and leave the answer field for answers. That keeps the thread logically organized.

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21 months ago
GenoMax 107k

See answers in : FASTQ Phred33 average base quality score

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