Question: caluculate q30 from bam file with samtools
0
gravatar for genya35
28 days ago by
genya3520
genya3520 wrote:

Hello,

Is it possible to calculate Q30 from a bam with Samtools? I've looked at Samtools stats and didn't see that option.

Thanks

next-gen • 99 views
ADD COMMENTlink modified 28 days ago • written 28 days ago by genya3520

Q30 for entire dataset or average per read?

ADD REPLYlink written 28 days ago by genomax78k

One value for the entire bam file please.

ADD REPLYlink written 28 days ago by genya3520

Please use ADD REPLY and leave the answer field for answers. That keeps the thread logically organized.

ADD REPLYlink written 28 days ago by ATpoint29k
0
gravatar for genomax
28 days ago by
genomax78k
United States
genomax78k wrote:

See answers in : FASTQ Phred33 average base quality score

ADD COMMENTlink modified 28 days ago • written 28 days ago by genomax78k
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