Question: How to collapse redundant miRNAs predicted by miRDeep2?
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13 months ago by
282246229850 wrote:

I am using miRDeep2 to predict novel miRNAs across multiple samples for differential expression analysis. Here are some of my questions:

  1. How do I make a list of novel miRNAs across samples?
  2. In each sample, there are identical mature miRNAs derived from different loci, since I'm only interested in the expression profile of mature miRNAs, not their genomic location, I have to remove the redundant predictions from the list. How can I do this?
  3. How to name my newly discovered miRNAs?
srma-seq mirdeep2 rna-seq mirna • 349 views
ADD COMMENTlink modified 13 months ago • written 13 months ago by 282246229850
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