Question: Haplotype association in case control studies
0
gravatar for melania 2282
12 days ago by
melania 228270
melania 228270 wrote:

Hi , As a part of my analyses, I used Haplotype association test from Beagle 3. The results were interstion, but the problem that if I want to take into accotunt cofactors (sex,age,BMI ...) I had to use the output fro beagle in R. This step was not clear at all for me, so does any one have an experience with this or knows an aletrnative ?!

Thank you very much

snp case-control beagle3 • 70 views
ADD COMMENTlink modified 9 days ago by Kevin Blighe54k • written 12 days ago by melania 228270
1
gravatar for Kevin Blighe
9 days ago by
Kevin Blighe54k
Kevin Blighe54k wrote:

If you want to adjust for covariates (sex, age, BMI, et cetera), then you need to conduct a logistic regression analysis using the output of the haplotype analysis.

Kevin

ADD COMMENTlink written 9 days ago by Kevin Blighe54k

Hi Kevin, thanks for your reply, I understand that I have to use Beagle out put but how ? Do you have an experience with this ?

Thank you

ADD REPLYlink written 3 days ago by melania 228270

What data do you have right now? - please paste some examples

ADD REPLYlink written 3 days ago by Kevin Blighe54k
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