ERROR Trinity: Error, no Inchworm output is detected
0
0
Entering edit mode
4.2 years ago
Giovy • 0

Hello,

I have this error when I try to run the assembly:

Error, no Inchworm output is detected at: /nfs/student/giovy92/RNA-seq/practice/trinity/trinity_out_dir/inchworm.K25.L25.DS.fa at //nfs/student/giovy92/RNA-seq/trinityrnaseq_r20140717/Trinity line 1279.

What does it mean?

The command that I have is

Trinity --seqType fq --JM 100G --CPU 8 --single ./combined.fastq.gz

Thank you!!!

RNA-Seq Assembly • 1.0k views
ADD COMMENT
0
Entering edit mode

Which version of Trinity? Are there other error messages? Did you try the suggestions found at the many threads you find when searching for Error, no Inchworm output is detected?

ADD REPLY

Login before adding your answer.

Traffic: 1877 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6