ERROR Trinity: Error, no Inchworm output is detected
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2.3 years ago
Giovy • 0

Hello,

I have this error when I try to run the assembly:

Error, no Inchworm output is detected at: /nfs/student/giovy92/RNA-seq/practice/trinity/trinity_out_dir/inchworm.K25.L25.DS.fa at //nfs/student/giovy92/RNA-seq/trinityrnaseq_r20140717/Trinity line 1279.

What does it mean?

The command that I have is

Trinity --seqType fq --JM 100G --CPU 8 --single ./combined.fastq.gz

Thank you!!!

RNA-Seq Assembly • 583 views
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Which version of Trinity? Are there other error messages? Did you try the suggestions found at the many threads you find when searching for Error, no Inchworm output is detected?

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