Question: ERROR Trinity: Error, no Inchworm output is detected
0
gravatar for Giovy
8 months ago by
Giovy0
Giovy0 wrote:

Hello,

I have this error when I try to run the assembly:

Error, no Inchworm output is detected at: /nfs/student/giovy92/RNA-seq/practice/trinity/trinity_out_dir/inchworm.K25.L25.DS.fa at //nfs/student/giovy92/RNA-seq/trinityrnaseq_r20140717/Trinity line 1279.

What does it mean?

The command that I have is

Trinity --seqType fq --JM 100G --CPU 8 --single ./combined.fastq.gz

Thank you!!!

rna-seq assembly • 146 views
ADD COMMENTlink modified 8 months ago by RamRS30k • written 8 months ago by Giovy0

Which version of Trinity? Are there other error messages? Did you try the suggestions found at the many threads you find when searching for Error, no Inchworm output is detected?

ADD REPLYlink written 8 months ago by h.mon31k
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