Question: How to make functional annotation of a complete bacterial genome?
0
gravatar for vicslab
4 months ago by
vicslab0
vicslab0 wrote:

I have a complete genome from a bacterium. I would like to perform functional annotation of this entire genome (something similar to gene ontology) for free. What softwares could I use to make it? Do you have any suggestion?

I would like to have graphs (like pie chart) with function of these genes.

ADD COMMENTlink modified 4 months ago by gayachit200 • written 4 months ago by vicslab0

One option would be to try Prokka: https://github.com/tseemann/prokka

ADD REPLYlink written 4 months ago by Sej Modha4.7k
1
gravatar for gayachit
4 months ago by
gayachit200
India
gayachit200 wrote:

Hi

You could try MyPro https://sourceforge.net/projects/sb2nhri/files/MyPro/

You only have to put in the fastq file and it gives you everything starting from processing, assembly, annotation. It gives you outputs after combining results of atleast 4 tools.

ADD COMMENTlink written 4 months ago by gayachit200
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