I'm using Trim Galore to process RNAseq and in one of the samples in get this error:
Cutadapt terminated with exit signal: '24'. Terminating Trim Galore run, please check error message(s) to get an idea what went wrong...
This is the code I've used:
../TrimGalore-0.6.4/trim_galore ./data/*fastq.gz -q 33 --nextera --path_to_cutadapt cutadapt --fastqc --fastqc_args "--nogroup --outdir ./fastqc_trimmed/" -o ./trimmed/
I could not find the meaning of the error in Cutadapt docs.. any ideas?