Question: makeblastdb not recognized in virtual environment
0
gravatar for matujan
11 months ago by
matujan0
matujan0 wrote:

I am using a virtual environment (in Windows 10) for a small project and I need to use ncbi-blast however, even though I placed blast in the PATH variable, the virtual environment does not recognize it.

BLAST works in the command prompt but inside the virtual environment, it does not and gives this error:

makeblastdb : The term 'makeblastdb' is not recognized as the name of a cmdlet, function, script file, or operable program.
ADD COMMENTlink written 11 months ago by matujan0

if it's only for a small project, you might be quicker of with using the ncbi webblast service?

ADD REPLYlink written 11 months ago by lieven.sterck10k

the project for teaching purposes using virtual environment

ADD REPLYlink written 11 months ago by matujan0

Exactly how have you created a VE? What tool?

ADD REPLYlink written 11 months ago by Joe19k
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