Question: Reproduction eQTL GTex Box plot
0
gravatar for 7441980
7 months ago by
74419800
74419800 wrote:

HiI need to regenerate the eqtl boxplot graph forsome of my snps of interest.

I can see the eqtl graph in GTex portal but I cant export the image.

So, how can I downloadthe eqtl data from GTex portal ?

like this paper Figure 1 .

Thanks and regards

My post has been cross-posted to another site: https://bioinformatics.stackexchange.com/questions/12769/how-can-i-download-the-snp-genotyping-information-from-gtex

snp eqtl • 283 views
ADD COMMENTlink modified 7 months ago • written 7 months ago by 74419800

Hello 7441980!

It appears that your post has been cross-posted to another site: https://bioinformatics.stackexchange.com/questions/12769/how-can-i-download-the-snp-genotyping-information-from-gtex

This is typically not recommended as it runs the risk of annoying people in both communities.

ADD REPLYlink written 7 months ago by ATpoint41k

By the way, if you really want elaborate reponses then investing some effort is recommended. Please embed images properly, take care of the visual appearance of your post, check typos and show what you've tried.

ADD REPLYlink written 7 months ago by ATpoint41k

Okay, you are right!

ADD REPLYlink written 7 months ago by 74419800

Please do not delete questions after a user already invested time to post an answer. It is not forbidden to cross-post, but usually not recommended. Don't worry, just leave the question as is.

ADD REPLYlink written 7 months ago by ATpoint41k
0
gravatar for Fabio Marroni
7 months ago by
Fabio Marroni2.6k
Italy
Fabio Marroni2.6k wrote:

Hi! First of all, we cannot see the picture. Maybe you want to read this post on how to post figures on Biostars. Then, if the question is how to download the eqtl data from GTEx the answer is: Go to GTEx page, select the dataset you want and download it. While for some datasets you would need to register, maybe for you downloading some of the datasets under the line "Single-Tissue cis-QTL Data" should be enough. This depends on what you exactly need, but should be enough!

ADD COMMENTlink written 7 months ago by Fabio Marroni2.6k

Thank you for your answer! Actually I have been studying the page you mentioned for 2 days . I still have no idea which file contains the genotype data of a SNP (eg, sample 1 is AA ; sample 2 is AG, etc). Would you please give me some more hints ? That will save my life! (Apology for the hidden figure)

ADD REPLYlink written 7 months ago by 74419800
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