Where to find reference transcriptome for firefly?
1
0
Entering edit mode
2.6 years ago
jrleary ▴ 190

I'm not sure if this exists (never worked with any genomes outside human/mouse before), but if possible I need to download a reference transcriptome for a firefly, specifically Photinus pyralis. The transcriptome would need to work with cellranger, i.e. I would need to be able to align some FASTQ reads to it using count in order to see if there's any firefly genes in my sample. Any ideas on if this exists / where I could go to find it ?

scRNA-seq cellranger alignment transcriptome • 532 views
ADD COMMENT
1
Entering edit mode
2.6 years ago
GenoMax 123k

From NCBI via firefly genome page. Look at the links in the top box for genome, transcripts, GFF files.

ADD COMMENT
0
Entering edit mode

Awesome, thanks so much!

ADD REPLY

Login before adding your answer.

Traffic: 2530 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6