Question: Where to find reference transcriptome for firefly?
0
gravatar for jrleary
8 months ago by
jrleary170
Lineberger Comprehensive Cancer Center
jrleary170 wrote:

I'm not sure if this exists (never worked with any genomes outside human/mouse before), but if possible I need to download a reference transcriptome for a firefly, specifically Photinus pyralis. The transcriptome would need to work with cellranger, i.e. I would need to be able to align some FASTQ reads to it using count in order to see if there's any firefly genes in my sample. Any ideas on if this exists / where I could go to find it ?

ADD COMMENTlink modified 8 months ago by GenoMax94k • written 8 months ago by jrleary170
1
gravatar for GenoMax
8 months ago by
GenoMax94k
United States
GenoMax94k wrote:

From NCBI via firefly genome page. Look at the links in the top box for genome, transcripts, GFF files.

ADD COMMENTlink written 8 months ago by GenoMax94k

Awesome, thanks so much!

ADD REPLYlink written 8 months ago by jrleary170
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