Entering edit mode
4.0 years ago
alexandriapinto1
•
0
I want to set AWS_BATCH_JOB_ATTEMPT in my pipeline. My pipeline is a cromwell wdl pipeline which utilizes AWS batch as the backend. I submit jobs like so:
curl -X POST "http://172.31.77.179:8000/api/workflows/v1" \
-H "accept: application/json" \
-F "workflowSource=@rnaseq_pipeline.wdl" \
-F "workflowInputs=@rnaseq_pipeline.json" \
-F "workflowDependencies=@tasks.zip"
From what I read on aws, they seem to set the environment variables for jobs through the websites GUI. I submit my jobs with curl, how would I add the AWS_BATCH_JOB_ATTEMPT value?
Any help would be appreciated, I am not familiar with either cromwell or batch.
You may want to post this directly on Broad forum's since people who support cromwell may not stop by here regularly.