Hi, I am currently using bowtie2 to align my sequence. I am using a assembled sequence to align with my reference sequence.Unfortunately, the output after aligning is stated as killed and error. I am currently stuck in this situation. Below is my command line which is inserted and the output.
$ bowtie2 -f -x Mycobacterium -U R1_final.contigs.fa -S R1.sam Killed (ERR): bowtie2-align exited with value 137
I am not sure what is the problem and how to solve it. I hope I can get some help here :)
p/s: I am still abit new to bioinformatics and so sorry for the inconvenience caused :)