How to build 16S rRNA matrix?
0
0
Entering edit mode
17 months ago
buce_buper • 0

Hi all,

I have one question, "how to build 16S rRNA similarity matrix?".

I am trying to reclassify a family of bacteria, but inorder to do that I need to blastn multiple 16S rRNA sequences againts each other to build matrix, about 400 sequences. I use blastn, but the result did not give me any matrix. Is there any other method to do this? or I am missing something here.

Thank you for taking time to reply,

Best Regards

Buce,

gene 16S rRNA Bioinformatics Tutorial • 328 views
ADD COMMENT
0
Entering edit mode

It's not really cleat what you are trying to achieve. What is your starting point? Generally there exists a multiple sequence alignment of all bacterial 16S in databases like Silva or GreenGenes

ADD REPLY

Login before adding your answer.

Traffic: 1113 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6