Question: Calculate enrichment factor from a list of GO terms
gravatar for felipead66
10 weeks ago by
felipead6670 wrote:

I have a list of genes and the corresponding GO terms for a non-model organism. Could I calculate enrichment factor from the list of GO terms?

go R enrichment factor • 109 views
ADD COMMENTlink written 10 weeks ago by felipead6670

Yes. You could try using clusterProfiler::enricher and pass in your GO-term to gene mappings with the TERM2GENE argument. This won't identify GO-term-depletions though.

ADD REPLYlink written 10 weeks ago by russhh5.4k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1608 users visited in the last hour