Question: Calculate enrichment factor from a list of GO terms
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gravatar for felipead66
10 weeks ago by
felipead6670
felipead6670 wrote:

I have a list of genes and the corresponding GO terms for a non-model organism. Could I calculate enrichment factor from the list of GO terms?

go R enrichment factor • 109 views
ADD COMMENTlink written 10 weeks ago by felipead6670

Yes. You could try using clusterProfiler::enricher and pass in your GO-term to gene mappings with the TERM2GENE argument. This won't identify GO-term-depletions though. https://bioconductor.org/packages/release/bioc/html/clusterProfiler.html

ADD REPLYlink written 10 weeks ago by russhh5.4k
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