Question: How To Find Stranded Rna-Seq Experiments Data
2
gravatar for Leszek
5.5 years ago by
Leszek3.8k
IIMCB, Poland
Leszek3.8k wrote:

Anyone have an idea how to find data from stranded RNA-Seq experiments in ENA or SRA? I have tried simple keyword search, but with no success:/

sra fastq rna-seq • 1.8k views
ADD COMMENTlink modified 5.3 years ago • written 5.5 years ago by Leszek3.8k

Why was this question closed?

ADD REPLYlink written 5.5 years ago by Neilfws47k

No, and I would (also) be interested in knowing the answer !

ADD REPLYlink written 5.5 years ago by Julien Textoris430

I'll take that as a vote to reopen. Seems like a reasonable bioinformatics question to me.

ADD REPLYlink written 5.5 years ago by Neilfws47k

Sorry, I closed it as I have found solution quite soon after posting it just by random trials... Details below

ADD REPLYlink written 5.5 years ago by Leszek3.8k

Good; it's perfectly fine to reply to your own question if you find the answer, then the community benefits. Feel free to select your own answer as the best one too :)

ADD REPLYlink modified 5.5 years ago • written 5.5 years ago by Neilfws47k
2
gravatar for Leszek
5.5 years ago by
Leszek3.8k
IIMCB, Poland
Leszek3.8k wrote:

Search for Strand-specific[All Fields] AND RNA-seq[All Fields] AND "Saccharomyces cerevisiae"[Organism] in SRA and then explore runs one by one. You should find in Library info like:

No idea how to search for those in ENA though...

Hope someone will find it useful.

ADD COMMENTlink modified 5.5 years ago • written 5.5 years ago by Leszek3.8k
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