Question

How To Find Stranded Rna-Seq Experiments Data

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12.0 years ago

Leszek 4.2k

Anyone have an idea how to find data from stranded RNA-Seq experiments in ENA or SRA? I have tried simple keyword search, but with no success:/

rna-seq sra fastq • 4.2k views

ADD COMMENT • link 11.7 years ago by Leszek 4.2k

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Why was this question closed?

ADD REPLY • link 12.0 years ago by Neilfws 49k

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No, and I would (also) be interested in knowing the answer !

ADD REPLY • link 12.0 years ago by Julien Textoris ▴ 430

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I'll take that as a vote to reopen. Seems like a reasonable bioinformatics question to me.

ADD REPLY • link 12.0 years ago by Neilfws 49k

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Sorry, I closed it as I have found solution quite soon after posting it just by random trials... Details below

ADD REPLY • link 12.0 years ago by Leszek 4.2k

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Good; it's perfectly fine to reply to your own question if you find the answer, then the community benefits. Feel free to select your own answer as the best one too :)

ADD REPLY • link 12.0 years ago by Neilfws 49k

score 3 · Answer 1 · 2012-05-07

Search for Strand-specific[All Fields] AND RNA-seq[All Fields] AND "Saccharomyces cerevisiae"[Organism] in SRA and then explore runs one by one. You should find in Library info like:

No idea how to search for those in ENA though...

Hope someone will find it useful.