How to get GTF file of virus genome
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13 months ago
Kumar ▴ 110

I have downloaded a viral genome, Autographa californica multiple nucleopolyhedrovirus (AcMNPV) from GenBank (KM667940.1). Please suggest how I can get a gft file. Do I need to generate manually if so please share a tutorial to generate it.

genome gene assembly • 508 views
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13 months ago
JC 12k
  1. Get the GFF3 file from NCBI (use the Sent to -> Complete record -> File -> Format GFF3)
  2. Convert the GFF3 to GTF, you can use BioPerl/BioPython for that
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Thanks you. It works.

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Hi,

Please can you explain how you get it to work? I am trying to do the same task but no luck. Thanks

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