Question: ERROR:Error in x[seq_len(n)] : object of type 'S4' is not subsettable
0
gravatar for dpc
7 months ago by
dpc150
India
dpc150 wrote:

Hi community!!! I am a novice in R package and analysing mothur files with phyloseq. I have imported mothur files with these codes:

physeq = import_mothur(mothur_shared_file = "stability.paired.trim.contigs.unique.good.filter.unique.precluster.pick.pick.opti_mcc.shared",
                               mothur_constaxonomy_file = "stability.paired.trim.contigs.unique.good.filter.unique.precluster.pick.pick.opti_mcc.0.03.cons.taxonomy")

But, after head(phyloseq) , I am getting the following ERROR:

Error in x[seq_len(n)] : object of type 'S4' is not subsettable

Can anyone get me out of this?

Thanks and Regards, DC7

ADD COMMENTlink modified 7 months ago by Joe18k • written 7 months ago by dpc150

head(phyloseq) or head(physeq)?

ADD REPLYlink modified 7 months ago • written 7 months ago by Fabio Marroni2.6k

oops.... sorry.... It's head(physeq)....

ADD REPLYlink written 7 months ago by dpc150
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