Question: Fastq-dump timeout exhausted error
gravatar for smrutimayipanda
4 months ago by
smrutimayipanda10 wrote:

Hi i m getting the following error while converting the sra to fastq using fastq dump:

fastq-dump.2.8.0 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed )

I have tried many times but not able to find a solution to this. Please help me regarding this.

rna-seq fastq-dump sratoolkit • 330 views
ADD COMMENTlink modified 4 months ago • written 4 months ago by smrutimayipanda10

See sra-explorer : find SRA and FastQ download URLs in a couple of clicks and Fast download of FASTQ files from the European Nucleotide Archive (ENA) These links explain how to directly download fastq files rather than using fastq-dump which is sometimes quite unreliable. Version 2.8.0 is very old, consider updating it.

ADD REPLYlink modified 4 months ago • written 4 months ago by ATpoint41k

Thank you for your reply. I will definitely go through this.

ADD REPLYlink written 4 months ago by smrutimayipanda10
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