Fastq-dump timeout exhausted error

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3.8 years ago

smrutimayipanda ▴ 20

Hi i m getting the following error while converting the sra to fastq using fastq dump:

fastq-dump.2.8.0 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed )

I have tried many times but not able to find a solution to this. Please help me regarding this.

rna-seq sratoolkit fastq-dump • 1.8k views

ADD COMMENT • link 3.8 years ago by smrutimayipanda ▴ 20

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See sra-explorer : find SRA and FastQ download URLs in a couple of clicks and Fast download of FASTQ files from the European Nucleotide Archive (ENA) These links explain how to directly download fastq files rather than using fastq-dump which is sometimes quite unreliable. Version 2.8.0 is very old, consider updating it.

ADD REPLY • link 3.8 years ago by ATpoint 82k

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Thank you for your reply. I will definitely go through this.

ADD REPLY • link 3.8 years ago by smrutimayipanda ▴ 20

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