How do I get repeating regions from fasta file or directly from internet
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3.8 years ago

If I go to ncbi site, apply customize view -> Customize -> All features -> Update view and then ctrl + f : Alu.. I can get all alu repeaing regions coordinates from this chromosome.

It looks like:

repeat_region   complement(37490..37800)
             /note="AluY"
             /rpt_family="SINE/Alu"
             /rpt_type=DISPERSED

How could I download all this coordinates and names of repeating regions from the internet to .txt file? Or some tool

genome • 577 views
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Is there some description for values given, name of repeat (alu, L1 or other name)? And what is it animal for?

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Sounds like Repbase is what you need. If you are an academic user you can access it at this link.

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