Question: Remove reads where quality score length does not equal sequence length
0
gravatar for elisobel
5 weeks ago by
elisobel0
Reed College, Portland, OR
elisobel0 wrote:

Hello,

I was wondering if there's a way to remove reads from a SAM/BAM file in which the length of the quality score column does not equal the length of the sequence column.

Thank you, Eli

ADD COMMENTlink written 5 weeks ago by elisobel0

Can you post one of such record? This sounds strange.

ADD REPLYlink written 5 weeks ago by MatthewP690

Generally, this should not happen, please check the software logs.

ADD REPLYlink written 5 weeks ago by Arup Ghosh2.7k
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