Remove reads where quality score length does not equal sequence length

Question

[elisobel]

Hello,

I was wondering if there's a way to remove reads from a SAM/BAM file in which the length of the quality score column does not equal the length of the sequence column.

Thank you, Eli

[MatthewP]

Can you post one of such record? This sounds strange.

[Arup Ghosh]

Generally, this should not happen, please check the software logs.