Question: Remove reads where quality score length does not equal sequence length
0
gravatar for elisobel
3 months ago by
elisobel0
Reed College, Portland, OR
elisobel0 wrote:

Hello,

I was wondering if there's a way to remove reads from a SAM/BAM file in which the length of the quality score column does not equal the length of the sequence column.

Thank you, Eli

ADD COMMENTlink written 3 months ago by elisobel0

Can you post one of such record? This sounds strange.

ADD REPLYlink written 3 months ago by MatthewP780

Generally, this should not happen, please check the software logs.

ADD REPLYlink written 3 months ago by Arup Ghosh2.7k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1918 users visited in the last hour