I have a multiple sequence alignment file like that,
>seq A AAACTCAGCTACG >seq B AAACACTGCTATG >seq C AAAGACTGCTATC
And I want generate two sequence from the input file,
> consensus AAACACTGCTATG >Alt AAAGTCAGCTACC
Are there any software can be used to achieve this task? Any code would be much appreciated! Thank you.