I am trying to obtain volcano plot for deseq2 results. I tried Enhanced volcano plot package.
It was easy to follow, however I wish to obtain different colors for up and down regulated genes. Custom over-ride example was easy to plot based on log2FC. However it does not take pvalue cutoff into account.
How to obtain different colour for genes with pvalue cutoff of 10e-16 and log2FC? Kindly suggest an answer!