SRA tool kit
1
0
Entering edit mode
16 months ago

hi everybody; I installed SRA toolkit last day but when I want to use prefetch this message appears:

This SRA tool kit installation has not been configured what's the problem??

rna-seq next-gen prefetch • 806 views
ADD COMMENT
3
Entering edit mode
16 months ago
GenoMax 109k

See the section on Configuring the toolkit on this page.

ADD COMMENT
0
Entering edit mode

I saw it before but I can't understand it, could you please help me?

ADD REPLY
0
Entering edit mode

If you install it with conda you won't have to configure anything

ADD REPLY
0
Entering edit mode

You need to set a temp directory where prefetch can download/store data. Directions are clear on the page I linked. You need to run ./vdb-config -i from within the bin directory. You should then see the text GUI. Change between different options using tab key. Minimally you should just need to run the config program, tab over to Exit button (pressing 7 may do the same) and then save when you exit.

If you find this complicated then install a new copy of sratoolkit using conda as noted by @jordi.

ADD REPLY

Login before adding your answer.

Traffic: 2415 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6