how can install velvet on ubuntu

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5.3 years ago

askari.arezou94 ▴ 30

Hello everyone I Can't install Velvet on ubuntu. please help me to install it

Assembly genome sequencing • 3.7k views

ADD COMMENT • link 5.3 years ago by askari.arezou94 ▴ 30

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Use conda. Once you install conda, follow instructions here to install velvet.

ADD REPLY • link 5.3 years ago by GenoMax 154k

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Thank you so much for your response. I test it, if I have problem with it, say you. tnx.

ADD REPLY • link 5.3 years ago by askari.arezou94 ▴ 30

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Do you have admin rights? Then try sudo apt install velvet in the terminal. ref

ADD REPLY • link 5.3 years ago by user_without_id ▴ 150

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Do you have other Idea to install Velvet?

ADD REPLY • link 5.3 years ago by askari.arezou94 ▴ 30

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how can be sure that velvet installed?

ADD REPLY • link 5.3 years ago by askari.arezou94 ▴ 30

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"install" a program on Linux consists of two steps:

Creating the program's executable file (by either downloading the executable directly or compiling it from source)
Adding the location of the executable file to the $PATH variable.

Both apt-get and conda will do all necessary steps for you. IIRC velvet has 2 executables - velvetg and velveth. You can run something like velvetg -h to check if velvet was installed right.