I have two chilli pepper lines that I'm comparing over a range of conditions. However, one of those lines is an interspecies hybrid. I'm wondering how is best to proceed with aligning my reads. Genomes are available for both the species - Capsicum annuum and Capsicum Baccatum so I guess I could align to the first genome and check any unaligned reads against the other in case they are species specific. Or would it be best to produce de novo transcriptome assemblies and compare that way?
Question: RNAseq analysis of interspecies hybrid
6 weeks ago by
alicelouiseflint • 0
alicelouiseflint • 0 wrote:
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